| Jornada 1 | 27-08-2006 | HERCULES | 0 | MALAGA | 1 |
| Jornada 2 | 03-09-2006 | REAL MADRID B | 0 | HERCULES | 3 |
| Jornada 3 | 10-09-2006 | HERCULES | 1 | VECINDARIO | 0 |
| Jornada 4 | 17-09-2006 | TENERIFE | 3 | HERCULES | 2 |
| Jornada 5 | 24-09-2006 | HERCULES | 0 | MURCIA | 1 |
| Jornada 6 | 01-10-2006 | ALMERIA | 3 | HERCULES | 0 |
| Jornada 7 | 08-10-2006 | HERCULES | 0 | CADIZ | 1 |
| Jornada 8 | 15-10-2006 | CASTELLON | 0 | HERCULES | 0 |
| Jornada 9 | 22-10-2006 | SALAMANCA | 2 | HERCULES | 2 |
| Jornada 10 | 29-10-2006 | HERCULES | 3 | ALAVES | 1 |
| Jornada 11 | 05-11-2006 | ALBACETE | 0 | HERCULES | 1 |
| Jornada 12 | 12-11-2006 | HERCULES | 2 | NUMANCIA | 0 |
| Jornada 13 | 19-11-2006 | SPORTING GIJON | 1 | HERCULES | 0 |
| Jornada 14 | 26-11-2006 | HERCULES | 1 | LAS PALMAS | 1 |
| Jornada 15 | 03-12-2006 | CIUDAD MURCIA | 2 | HERCULES | 1 |
| Jornada 16 | 10-12-2006 | HERCULES | 1 | POLI.EJIDO | 0 |
| Jornada 17 | 17-12-2006 | XEREZ | 0 | HERCULES | 2 |
| Jornada 18 | 20-12-2006 | HERCULES | 2 | VALLADOLID | 2 |
| Jornada 19 | 07-01-2007 | LORCA | 0 | HERCULES | 1 |
| Jornada 20 | 14-01-2007 | HERCULES | 3 | PONFERRADINA | 0 |
| Jornada 21 | 21-01-2007 | ELCHE | 2 | HERCULES | 0 |
| Jornada 22 | 28-01-2007 | MALAGA | 0 | HERCULES | 0 |
| Jornada 23 | 04-02-2007 | HERCULES | 0 | REAL MADRID B | 3 |
| Jornada 24 | 11-02-2007 | VECINDARIO | 1 | HERCULES | 1 |
| Jornada 25 | 18-02-2007 | HERCULES | 3 | TENERIFE | 1 |
| Jornada 26 | 25-02-2007 | MURCIA | 3 | HERCULES | 1 |
| Jornada 27 | 04-03-2007 | HERCULES | 0 | ALMERIA | 2 |
| Jornada 28 | 11-03-2007 | CADIZ | 1 | HERCULES | 1 |
| Jornada 29 | 18-03-2007 | HERCULES | 2 | CASTELLON | 2 |
| Jornada 30 | 25-03-2007 | HERCULES | 2 | SALAMANCA | 0 |
| Jornada 31 | 01-04-2007 | ALAVES | 2 | HERCULES | 3 |
| Jornada 32 | 08-04-2007 | HERCULES | 0 | ALBACETE | 1 |
| Jornada 33 | 15-04-2007 | NUMANCIA | 2 | HERCULES | 2 |
| Jornada 34 | 22-04-2007 | HERCULES | 1 | SPORTING GIJON | 1 |
| Jornada 35 | 29-04-2007 | LAS PALMAS | 3 | HERCULES | 1 |
| Jornada 36 | 06-05-2007 | HERCULES | 1 | CIUDAD MURCIA | 1 |
| Jornada 37 | 13-05-2007 | POLI.EJIDO | 2 | HERCULES | 0 |
| Jornada 38 | 20-05-2007 | HERCULES | 2 | XEREZ | 0 |
| Jornada 39 | 27-05-2007 | VALLADOLID | 0 | HERCULES | 1 |
| Jornada 40 | 03-06-2007 | HERCULES | 1 | LORCA | 1 |
| Jornada 41 | 10-06-2007 | PONFERRADINA | 4 | HERCULES | 1 |
| Jornada 42 | 17-06-2007 | HERCULES | 0 | ELCHE | 2 |